FROM postgres:10

ENV POSTGRES_USER pluto
ENV POSTGRES_PASSWORD power$$14
ENV POSTGRES_DB pluto

RUN apt-get update && apt-get install -y --no-install-recommends \
		bzip2 \
		unzip \
		xz-utils \
	&& rm -rf /var/lib/apt/lists/*

# Default to UTF-8 file.encoding
ENV LANG C.UTF-8

# add a simple script that can auto-detect the appropriate JAVA_HOME value
# based on whether the JDK or only the JRE is installed
RUN { \
		echo '#!/bin/sh'; \
		echo 'set -e'; \
		echo; \
		echo 'dirname "$(dirname "$(readlink -f "$(which javac || which java)")")"'; \
	} > /usr/local/bin/docker-java-home \
	&& chmod +x /usr/local/bin/docker-java-home

# do some fancy footwork to create a JAVA_HOME that's cross-architecture-safe
RUN ln -svT "/usr/lib/jvm/java-8-openjdk-$(dpkg --print-architecture)" /docker-java-home
ENV JAVA_HOME /docker-java-home

ENV JAVA_VERSION 8u171

# see https://bugs.debian.org/775775
# and https://github.com/docker-library/java/issues/19#issuecomment-70546872
ENV CA_CERTIFICATES_JAVA_VERSION 20161107~bpo8+1

# deal with slim variants not having man page directories (which causes "update-alternatives" to fail)
RUN set -ex; \
	if [ ! -d /usr/share/man/man1 ]; then \
		mkdir -p /usr/share/man/man1; \
	fi; \
	echo 'deb http://ftp.se.debian.org/debian/ stretch main contrib non-free' > /etc/apt/sources.list.d/stretch.list && \
	echo 'deb http://ftp.se.debian.org/debian/ stretch-backports main contrib non-free' > /etc/apt/sources.list.d/stretch-backports.list && \
	apt-get update && \
	apt-get install -y --no-install-recommends \
		openjdk-8-jdk-headless \
		ca-certificates-java \
		ca-certificates \
		openssl \
		wget \
		libapr1-dev \
		coreutils \
		dpkg-dev dpkg \
		gcc \
		libc-dev \
		make \
		libssl1.0.2 \
		libssl-dev \
		apache2 ;\
	rm -rf /var/lib/apt/lists/*

#RUN apt-mark auto libssl1.0.0

# set default java version
RUN update-java-alternatives --set /usr/lib/jvm/java-1.8.0-openjdk-amd64

# verify that "docker-java-home" returns what we expect
# update-alternatives so that future installs of other OpenJDK versions don't change /usr/bin/java
# ... and verify that it actually worked for one of the alternatives we care about
RUN	set -ex; \
    apt-get purge -y openjdk-7-jre-headless ; \
	[ "$(readlink -f "$JAVA_HOME")" = "$(docker-java-home)" ]; \
	update-alternatives --get-selections | awk -v home="$(readlink -f "$JAVA_HOME")" 'index($3, home) == 1 { $2 = "manual"; print | "update-alternatives --set-selections" }'; \
	update-alternatives --query java | grep -q 'Status: manual'

# see CA_CERTIFICATES_JAVA_VERSION notes above
RUN /var/lib/dpkg/info/ca-certificates-java.postinst configure
RUN apt-get update && apt-get install -y apt-transport-https ca-certificates

#RUN echo "deb [trusted=yes] https://eddelbuettel.github.io/drr35/ ./" > /etc/apt/sources.list.d/debian-r-3.5.list 
RUN echo "deb [trusted=yes] https://cloud.r-project.org/bin/linux/debian stretch-cran35/" > /etc/apt/sources.list.d/debian-r-3.5.list 

ENV R_BASE_VERSION 3.5.0

# If you're reading this and have any feedback on how this image could be
# improved, please open an issue or a pull request so we can discuss it!
#
#   https://github.com/docker-library/openjdk/issues

ENV DEBIAN_FRONTEND noninteractive
RUN set -e \
    && apt-get update \
    && apt-get install -y --no-install-recommends supervisor sasl2-bin vim mc rsyslog \
    build-essential libssl-dev curl telnet

## Now install R and littler, and create a link for littler in /usr/local/bin
## Also set a default CRAN repo, and make sure littler knows about it too
## NB '-t unstable' paused to allow drr35 repo to supply current ones
RUN apt-get update \
	&& apt-get install -y \
		littler \
                r-cran-littler \
		r-base=${R_BASE_VERSION}-* \
		r-base-dev=${R_BASE_VERSION}-* \
		r-recommended=${R_BASE_VERSION}-* \
        && echo 'options(repos = c(CRAN = "https://cloud.r-project.org/"), download.file.method = "libcurl")' >> /etc/R/Rprofile.site \
        && echo 'source("/etc/R/Rprofile.site")' >> /etc/littler.r \
	&& ln -s /usr/lib/R/site-library/littler/examples/install.r /usr/local/bin/install.r \
	&& ln -s /usr/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r \
	&& ln -s /usr/lib/R/site-library/littler/examples/installGithub.r /usr/local/bin/installGithub.r \
	&& ln -s /usr/lib/R/site-library/littler/examples/testInstalled.r /usr/local/bin/testInstalled.r \
	&& install.r docopt \
	&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds \
	&& rm -rf /var/lib/apt/lists/*

# RUN echo "install.packages('Rserve')" | R --save
RUN echo "install.packages('Rserve',,'http://www.rforge.net/')" | R --save

RUN apt-get update && apt-get install libcurl4-openssl-dev
RUN R -e "install.packages('heatmaply')"
RUN R -e "install.packages('irlba')"

# uses to convert sh scripts created on Windows OS or building container under Windows OS
RUN apt-get update && apt-get install -y dos2unix

RUN set -e \
    && mkdir -p /usr/local/pluto/distrib

WORKDIR /usr/local/pluto
VOLUME /usr/local/pluto/distrib
EXPOSE 80
EXPOSE 22
EXPOSE 443
EXPOSE 6311

ENV BASE_HREF -

ENV VERSION 1

ADD assets/install.sh /opt/install.sh
ADD assets/deploy.sh /usr/local/pluto/deploy.sh
ADD assets/000-default.conf /etc/apache2/sites-available/000-default.conf
RUN set -e && a2enmod proxy && a2enmod proxy_http && a2enmod rewrite && dos2unix /opt/install.sh && chmod 755 /opt/install.sh && chmod 755 /usr/local/pluto/deploy.sh && ls -l /opt


ADD target/front.zip /usr/local/pluto/distrib/front.zip
ADD target/Pluto-0.0.1-SNAPSHOT.jar /usr/local/pluto/Pluto.jar
ADD target/worker.jar /usr/local/pluto/worker.jar
ADD assets/initial.postgresql.sql /docker-entrypoint-initdb.d/initial.sql
ADD target/conf /usr/local/pluto/conf

RUN unzip distrib/*.zip -d front


CMD /opt/install.sh; /usr/bin/supervisord -c /etc/supervisor/supervisord.conf